library("hdxstats")
library("dplyr")
library("ggplot2")
library("RColorBrewer")
library("tidyr")
library("pheatmap")
library("scales")
library("viridis")
library("patchwork")
library("Biostrings")
library("xfun")
library("tidyverse")source("R/test_script_app2.R")Parse input raw data and output QFeatures object instance given a CSV file path for different test cases.
# First test case
csv_filepath <- "/homes/sanjuan/R/x86_64-pc-linux-gnu-library/4.1/hdxstats/extdata/MBP.csv"
# CASE 1: Parse data, given input data file path + parameter file
hdx_data <- extract_hdx_data(csv_filepath, parameter_file = "vignettes/data/myparameters.hdxp")
# CASE 2: Parse data, given input data file path + list of parameters
data <- read_csv(csv_filepath)
myparameters <- make_parameter_file(data)
hdx_data <- extract_hdx_data(csv_filepath, parameters = myparameters)
# CASE 3: Parse data, given input data file path. Work out parameters for pre-processing using interactive mode
hdx_data <- extract_hdx_data(csv_filepath, parameter_file = "vignettes/data/myparameters.hdxp")# INPUT
data_selection <- hdx_data[,1:24]
all_peptides <- rownames(data_selection)[[1]]
starting_parameters <- list(a = NULL, b = 0.001, d = NULL, p = 1)
# OUTPUT
results <- analyse_kinetics(data = data_selection,
method = "fit",
peptide_selection = all_peptides,
start = starting_parameters)results$methodView fitting curves of Deu-uptake kinetics for all available conditions associated to selected peptides
graphics_kinetics <- visualise_hdx_data(results, type="kinetics")
graphics_kinetics[[1]] | graphics_kinetics[[2]] | graphics_kinetics[[3]]View forest plots showing the difference between uptake measurements between conditions, plus the dispersion between their respective fitting model parameters
graphics_forest <- visualise_hdx_data(results, type="forest")
graphics_forest[[1]] | graphics_forest[[2]] | graphics_forest[[3]]Combine graphical outputs in a single canvas
graphics_forest[[1]] | graphics_kinetic[[1]]Display numerical values as a table
graphics_forest[[1]]$data# INPUT
data_selection <- hdx_data[,1:100]
all_peptides <- rownames(data_selection)[[1]] # get all peptides
starting_parameters <- list(a = NULL, b = 0.0001, d = NULL, p = 1)
# OUTPUT
results <- analyse_kinetics(data = data_selection,
method = "dfit",
peptide_selection = all_peptides[37],
start = starting_parameters)
graphics_kinetics <- visualise_hdx_data(results, type="kinetics")View graphical output for reference peptide shown in LHS Top corner.
graphics_kineticsSingle-domain antibody (sdAb) binding assays to HOIP.
csv_filepath <- "/homes/sanjuan/R/x86_64-pc-linux-gnu-library/4.1/hdxstats/extdata/N64184_1a2_state.csv" data <- read_csv(csv_filepath)
make_parameter_file(data, save = "vignettes/data/N64184_1a2_state.hdxp")hdx_data <- extract_hdx_data(csv_filepath, parameter_file = "vignettes/data/N64184_1a2_state.hdxp")# INPUT
data_selection <- hdx_data[,1:33]
all_peptides <- rownames(data_selection)[[1]] # get all peptides
starting_parameters <- list(a = NULL, b = 0.01, d = NULL)
formula = value ~ a * (1 - exp(-b*(timepoint))) + d
# OUTPUT
results <- analyse_kinetics(data = data_selection,
method = "dfit",
peptide_selection = all_peptides[3],
start = starting_parameters,
formula = formula)graphics <- visualise_hdx_data(results, type="kinetics")
custom_colors <- scale_color_manual(values = colorRampPalette(brewer.pal(8, name = "Set2"))(11))
graphics + custom_colorsOriginal raw data
#csv_filepath <- "inst/extdata/Project_2_SecA_Cluster_Data.csv"
#data <- read_csv(csv_filepath)
#data$Replicate <- unlist(lapply(strsplit(data$File, split="_"), function(x) tail(x, n=1)))
#write_csv(data, file = "inst/extdata/Project_2_SecA_Cluster_Data_edited.csv")
csv_filepath <- "inst/extdata/Project_2_SecA_Cluster_Data_edited.csv"Had to pre-process its content to add Replicate column
data <- read_csv(csv_filepath)
make_parameter_file(data, save = "vignettes/data/Project_2_SecA_Cluster_Data.hdxp")hdx_data <- extract_hdx_data(csv_filepath, parameter_file = "vignettes/data/Project_2_SecA_Cluster_Data.hdxp")[1] "INFO: You gave me a CSV file of your HDX-MSM data"
[1] "INFO: I will pre-process your data parse it using QFeatures ..."
[1] "INFO: You provided a 'parameter_file', I will extract parameters from this to format your output QFeatures data object."
[1] "INFO: You provided a list of 'parameters', I will extract parameters from this to format your output QFeatures data object."
[1] "INFO: Stripped your 'Exposure_Time' values from non-numeric characters."
[1] "INFO: Your original_time_units == 'm'. I will convert your 'Exposure_Time' values to seconds (s)."
[1] "INFO: Reformatting your data to a wide format..."Note: Using an external vector in selections is ambiguous.
ℹ Use `all_of(columns_values)` instead of `columns_values` to silence this message.
ℹ See <https://tidyselect.r-lib.org/reference/faq-external-vector.html>.
This message is displayed once per session.Note: Using an external vector in selections is ambiguous.
ℹ Use `all_of(columns_fixed)` instead of `columns_fixed` to silence this message.
ℹ See <https://tidyselect.r-lib.org/reference/faq-external-vector.html>.
This message is displayed once per session.[1] "INFO: Parsing your data as a qDF object class instance. Method: parseDeutData"
[1] "WARNING: Your output data is not normalised."
[1] "WARNING: Your output data was not saved. You can provide an output path with 'save = my_path'"
[1] "INFO: I pre-processed you input CSV data content and now it's available as a QFeatures instance"pheatmap(t(assay(hdx_data)),
cluster_rows = FALSE,
cluster_cols = FALSE,
color = brewer.pal(n = 9, name = "BuPu"),
main = "secA heatmap",
fontsize = 14,
legend_breaks = c(0, 1, 2, 3, 4, 5, 6, max(assay(hdx_data))),
legend_labels = c("0", "1", "2", "3", "4", "5", "6", "Incorporation"))length(rownames(assay(hdx_data)))
[1] 449# Extract all column values for a given peptide and charge state ( all states, all replicates, all timepoints)
peptide_charge <- "YESALKKANL_1" #"LGGTQ_1"
peptide_charge_data <- as.data.frame(assay(hdx_data))[peptide_charge, ]
peptide_charge_data <- longFormat(peptide_charge_data)
peptide_charge_data$condition <- as.factor(str_match(peptide_charge_data$colname, "cond\\s*(.*)")[, 2]) # Modify this for data analysis functions since they expect a numeric for replicates
peptide_charge_conditions <- unique(peptide_charge_data$condition)
# For a fixed confition
state <- "SecA"
ldf <- peptide_charge_data %>% subset(condition == state)
ldf$timepoint <- as.numeric(str_match(ldf$colname, "X\\s*(.*?)\\s*rep")[, 2])
ldf$replicates <- as.factor(str_match(ldf$colname, "rep\\s*(.*)\\s*cond")[, 2])
# Identify if number of replicates for 0 timepoint match for subsequent timepoints and report if not the case
#sum(ldf$timepoint == 0)
#length(unique(ldf$timepoint))
ldf$replicates <- unlist(lapply(strsplit(as.vector(as.factor(str_match(ldf$colname, "rep\\s*(.*)\\s*cond")[, 2])), split="_"), function(x) tail(x, n=1)))
# Subtract Deu uptake value at 0 timepoint
replicate_number <- 1
single_replicate_data <- ldf %>% subset(replicates == replicate_number)
x <- single_replicate_data %>% subset(timepoint == 0)
if (is.null(x$value)){
print(x)
}else{
single_replicate_data$value <- single_replicate_data$value - x$value
print(single_replicate_data)
}message <-paste("INFO: You have", length(rownames(assay(hdx_data))), "peptide-charge paired values")
print(message)
[1] "INFO: You have 449 peptide-charge paired values"for (peptide_charge in rownames(assay(hdx_data))){
peptide_charge_data <- as.data.frame(assay(hdx_data))[peptide_charge, ]
peptide_charge_data <- longFormat(peptide_charge_data)
peptide_charge_data$condition <- as.factor(str_match(peptide_charge_data$colname, "cond\\s*(.*)")[, 2])
peptide_charge_conditions <- unique(peptide_charge_data$condition)
message <- paste("INFO: For ", peptide_charge, ", you have", length(peptide_charge_conditions), "conditions")
print(message)
for (state in peptide_charge_conditions){
ldf <- peptide_charge_data %>% subset(condition == state)
ldf$timepoint <- as.numeric(str_match(ldf$colname, "X\\s*(.*?)\\s*rep")[, 2])
ldf$replicates <- as.factor(str_match(ldf$colname, "rep\\s*(.*)\\s*cond")[, 2])
ldf$replicates <- unlist(lapply(strsplit(as.vector(as.factor(str_match(ldf$colname, "rep\\s*(.*)\\s*cond")[, 2])), split="_"), function(x) tail(x, n=1)))
# Subtract Deu uptake value at 0 timepoint
message <- paste("INFO: You have", length(unique(ldf$replicates)), "replicates, for", state)
print(message)
for (n_replicate in unique(ldf$replicates)){
single_replicate_data <- ldf %>% subset(replicates == n_replicate)
x <- single_replicate_data %>% subset(timepoint == 0)
if (is.null(x$value) | is.na(x$value)){
print("Found a NULL or NA vakue for timepoint 0")
print(x)
}else{
single_replicate_data$value <- single_replicate_data$value - x$value
print(single_replicate_data)
}
if (any(single_replicate_data$value < 0) | any(is.na(single_replicate_data$value))){
print("BEFORE")
print(single_replicate_data)
single_replicate_data$value <- single_replicate_data$value - x$value
print("AFTER")
print(single_replicate_data)
}
}
}
}[1] "INFO: For LGGTQ_1 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "INFO: For MLIKL_1 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "INFO: For LIKLLT_1 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "INFO: For IKLLT_1 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "INFO: For IINAME_1 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "INFO: For AMEPEM_1 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "INFO: For MEPEM_1 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "INFO: For EKLSDEELKGKTAE_3 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "INFO: For EKLSDEELKGKTAEF_2 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "INFO: For EELKGKTAEF_2 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "INFO: For RARLEKGEVL_3 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"
[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"
[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"
[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "INFO: For RARLEKGEVLE_3 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "INFO: For RARLEKGEVLENL_2 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "BEFORE"[1] "AFTER"[1] "INFO: For EKGEV_1 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "INFO: For ENLIPEA_1 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "INFO: For ENLIPEAF_1 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "INFO: For ENLIPEAF_2 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"
[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be used[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be used[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be used[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"
[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"
[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "INFO: For ENLIPEAFA_1 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "INFO: For ENLIPEAFA_2 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "INFO: For NLIPEAF_1 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "INFO: For LIPEAF_1 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "INFO: For IPEAF_1 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "BEFORE"[1] "AFTER"[1] "INFO: For PEAF_1 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "INFO: For PEAFA_1 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "INFO: For MRHFDVQL_2 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "INFO: For DVQLLGG_1 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "INFO: For LLGGMVL_1 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "INFO: For LGGMVL_1 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "INFO: For LGGMVLNE_1 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "INFO: For LGGMVLNE_2 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"
[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be used[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be used[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be used[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"
[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"
[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "Found a NULL or NA vakue for timepoint 0"[1] "BEFORE"[1] "AFTER"[1] "INFO: For MVLNE_1 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "INFO: For NERSIAEM_1 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "BEFORE"[1] "AFTER"[1] "INFO: For MRTGEGKTLTATL_2 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "INFO: For RTGEGKTLTATL_2 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "BEFORE"[1] "AFTER"[1] "INFO: For ATLPAYL_1 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "BEFORE"[1] "AFTER"[1] "INFO: For PAYL_1 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "INFO: For PAYLNA_1 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "INFO: For NALTGKGVHVVT_2 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "INFO: For NALTGKGVHVVTVND_2 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "BEFORE"[1] "AFTER"[1] "INFO: For YLAQRDAENNRPLF_3 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "INFO: For YLAQRDAENNRPLFE_2 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "BEFORE"[1] "AFTER"[1] "INFO: For AQRDAENNRPLFE_2 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "INFO: For EFLGL_1 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "INFO: For FLGL_1 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "INFO: For FLGLTVG_1 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "INFO: For LGLTVG_1 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "INFO: For LTVGINLPGMPAPAKREAY_3 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "INFO: For TVGINLPGMPAPAKREAYAAD_3 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "BEFORE"[1] "AFTER"[1] "INFO: For INLPGMPAPAKREAYAAD_2 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "BEFORE"[1] "AFTER"[1] "INFO: For LPGMPAP_1 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "BEFORE"[1] "AFTER"[1] "INFO: For ITYGTNNE_1 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "BEFORE"[1] "AFTER"[1] "INFO: For ITYGTNNEYGF_1 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "INFO: For ITYGTNNEYGFD_2 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "INFO: For NEYGF_1 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "INFO: For NEYGFD_1 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "INFO: For YGFD_1 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "INFO: For DYLRDNMAFSPEE_2 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "BEFORE"[1] "AFTER"[1] "INFO: For YLRDNM_1 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "BEFORE"[1] "AFTER"[1] "INFO: For YLRDNMA_2 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "BEFORE"[1] "AFTER"[1] "INFO: For YLRDNMAFSPEE_2 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "BEFORE"[1] "AFTER"[1] "INFO: For NMAFSPEE_1 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "INFO: For AFSPEE_1 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "INFO: For FSPEE_1 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "BEFORE"[1] "AFTER"[1] "INFO: For VDEVD_1 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "INFO: For EVDSIL_1 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "INFO: For VDSIL_1 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "INFO: For IDEARTPLIISGPAE_3 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be usedthe condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "INFO: For IDEARTPLIISGPAEDSSE_2 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "INFO: You have 3 replicates, for SecAYEG_ADP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG_AMPPNP"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "INFO: You have 5 replicates, for SecA_ADP"[1] "BEFORE"[1] "AFTER"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 5 replicates, for SecA_AMPPNP"[1] "BEFORE"[1] "AFTER"[1] "INFO: For ARTPLIISGPAE_2 , you have 6 conditions"
[1] "INFO: You have 5 replicates, for SecA"[1] "BEFORE"[1] "AFTER"[1] "INFO: You have 3 replicates, for SecAYEG"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"the condition has length > 1 and only the first element will be used[1] "BEFORE"[1] "AFTER"graphics <- visualise_hdx_data(results, type="kinetics") # READY
graphics <- visualise_hdx_data(results, type="forest") # READY
# NOTE: This only works to compare ONLY TWO distinct conditions, for the same timepoint, for all peptide fragments
# This needs to define a BASELINE state/condition and an ALTERNATE sate/condition
# NOTE: Data must be normalised by intercept
graphics <- visualise_hdx_data(results, type="manhatten", reference = NULL)# <<<<--- NEXT
# NOTE: NOT SURE ??
graphics <- visualise_hdx_data(results, type="epitope", level="peptide", fasta = "my_fasta_path") # Return an EpitopeMap
graphics <- visualise_hdx_data(results, type="epitope", level="residue", fasta = "my_fasta_path") # Return heatmap
graphics <- visualise_hdx_data(results, type="epitope", level="residue", pdb="my_pdb_path") # Return heatmap projected onto PDB
graphics <- visualise_hdx_data(results, type="protection", level="peptide") # Return heatmap for peptide residue-number ranges
graphics <- visualise_hdx_data(results, type="protection", level="residue", fasta = "my_fasta_path") # Return heatmap
graphics <- visualise_hdx_data(results, type="protection", level="residue", pdb="my_pdb_path") # Return heatmap projected onto PDB
# GUI: Make GUI by assembling these building blocks